PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_61270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 164aa    MW: 18338.1 Da    PI: 10.2714
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_61270.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.9e-51111381128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   lppGfrFhPtdeelv++yL++k+ g ++ +  vi+evd+yk+ePw+Lp+k+++   ++kewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v s
  MLOC_61270.1  11 LPPGFRFHPTDEELVMYYLCRKCGGLPIAA-PVIAEVDLYKLEPWRLPEKAAGggqDSKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGS 106
                   79*************************999.89***************64433333556************************************99 PP

           NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + v +kk Lvfy g+ pkg+kt+W+mheyrl
  MLOC_61270.1 107 --PRPVAIKKALVFYAGKPPKGVKTNWIMHEYRL 138
                   ..779***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-558146IPR003441NAC domain
PROSITE profilePS5100553.64311160IPR003441NAC domain
PfamPF023651.2E-2612138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDHGFDGALQ LPPGFRFHPT DEELVMYYLC RKCGGLPIAA PVIAEVDLYK LEPWRLPEKA  60
AGGGQDSKEW YFFSPRDRKY PNGSRPNRAA GTGYWKATGA DKPVGSPRPV AIKKALVFYA  120
GKPPKGVKTN WIMHEYRLAD VDRSAAARKK SNNALRVTTF VNLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-64613810140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3575980.0AK357598.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057F23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001308992.11e-95putative NAC domain transcription factor superfamily protein
RefseqXP_002450434.12e-95hypothetical protein SORBIDRAFT_05g005450
SwissprotQ53NF75e-94NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBLF2D1411e-119F2D141_HORVD; Predicted protein
STRINGMLOC_61270.31e-112(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.19e-81NAC family protein